Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR1646493

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

miRNA-Seq (Illumina HiSeq 2000, Homo sapiens), grade B. Excellent base quality—pct_q30_bases=95.1 and mean_base_quality=37.2—combined with large sequencing depth (48.2M reads) support robust miRNA expression profiling despite expected duplication (89.85%). Evidence strength is low; provisional pending measured revalidation.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2555787571 reported
total reads 48222407 reported
n content pct 0.006 measured
pct q20 bases 98.5 measured
pct q30 bases 95.1 measured
gc content pct 59.3 measured
mean read length 53 measured
mean base quality 37.2 measured
adapter content pct 0 measured
duplication rate pct 89.85 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.1 measured ×1 100%
mean base quality 37.2 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 89.85 measured ×0.4 0%
QC cost 10 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 89