SRR1649311

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

75/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Illumina MiSeq RNA-seq of ginseng (*Panax ginseng*) yields 7.7M reads with 90% Q20 and 80.4% Q30, providing moderate-to-high-quality transcript mapping of medicinal plant tissues for studying bioactive compound biosynthesis and development. Search: ginseng transcriptome, medicinal plant, *Panax ginseng* RNA-seq.

Data type / assay

bulk-RNA-seq

Organism

Panax ginseng

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 2152050739 reported

total reads 7681611 reported

n content pct 0.013 measured

pct q20 bases 90 measured

pct q30 bases 80.4 measured

gc content pct 42.4 measured

mean read length 139.8 measured

mean base quality 32.7 measured

adapter content pct 0.45 measured

duplication rate pct 18.19 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 75/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 80.4 measured ×1 52%

mean base quality 32.7 measured ×0.6 78%

adapter content pct 0.45 measured ×0.4 100%

duplication rate pct 18.19 measured ×0.4 100%

QC cost 41 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0