SRR1654347

ENA first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

80/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

HiSeq 2000 whole exome sequencing (WXS) of human achieves 97.1% Q20 and 92.7% Q30 across 11.9M reads, enabling sensitive SNP and indel discovery across exonic regions for disease association and personalized genomics applications. Search: human WES, exome sequencing, variant discovery.

Data type / assay

WES

Organism

Homo sapiens

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 2156855962 reported

total reads 11932700 reported

n content pct 0.013 measured

pct q20 bases 97.1 measured

pct q30 bases 92.7 measured

gc content pct 48.8 measured

mean read length 100.1 measured

mean base quality 36.1 measured

adapter content pct 0 measured

duplication rate pct 13.77 measured

mean target coverage 34.8 extrapolated

How this grade was computed

Weighted mean of 4 scored metric(s) → 80/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WES thresholds, weighted by its importance; nothing is hidden or subjective.

mean target coverage 34.8 extrapolated ×1.2 49%

pct q30 bases 92.7 measured ×1 100%

duplication rate pct 13.77 measured ×0.5 95%

adapter content pct 0 measured ×0.4 100%

QC cost 39 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0