Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR16989024

ENA first seen 2024

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

59/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Illumina HiSeq 2500 whole-genome shotgun sequencing of Clavispora phyllophila yeast generated 1.2M reads with moderate quality (81.4% Q20) and 41.5% GC content. This genome resequencing dataset is suitable for assembly of fungal genomes or variant discovery, though lower sequence quality and modest depth require careful quality filtering.

Data type / assay
WGS
Organism
Clavispora phyllophila
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 625306260 reported
total reads 1245630 reported
n content pct 0.007 measured
pct q20 bases 81.4 measured
pct q30 bases 81.4 measured
gc content pct 41.5 measured
mean read length 251 measured
mean base quality 25 measured
adapter content pct 6.97 measured
duplication rate pct 19.92 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 59/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 81.4 measured ×1 57%
duplication rate pct 19.92 measured ×0.5 63%
adapter content pct 6.97 measured ×0.4 57%
QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0