SRR1755760

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

89/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

HiSeq 2000 RNA-seq of *Anopheles gambiae* produces 1.6M reads with 95.6% Q20 despite small size, enabling targeted expression studies in specific mosquito tissues or pathological conditions relevant to vector competence. Search: *Anopheles gambiae* transcriptome, mosquito immunity, malaria.

Data type / assay

bulk-RNA-seq

Organism

Anopheles gambiae

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 247952280 reported

total reads 1631265 reported

n content pct 0.01 measured

pct q20 bases 95.6 measured

pct q30 bases 92.6 measured

gc content pct 39.4 measured

mean read length 76 measured

mean base quality 36.5 measured

adapter content pct 0.13 measured

duplication rate pct 60.43 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 89/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.6 measured ×1 100%

mean base quality 36.5 measured ×0.6 100%

adapter content pct 0.13 measured ×0.4 100%

duplication rate pct 60.43 measured ×0.4 32%

QC cost 11 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0