Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR1756257

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

64/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

RNA-Seq of Aedes albopictus on an Illumina HiSeq 2000 yields ~7.2 million reads at moderate base quality (86.8% ≥Q20, 80.1% ≥Q30), enabling transcriptome profiling of this Asian tiger mosquito vector for studies of arbovirus competence and adaptation. The moderate quality requires careful filtering. Reuse for abundance-based expression analysis is suitable.

Data type / assay
bulk-RNA-seq
Organism
Aedes albopictus
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1101192576 reported
total reads 7244688 reported
n content pct 0.038 measured
pct q20 bases 86.8 measured
pct q30 bases 80.1 measured
gc content pct 43.7 measured
mean read length 76 measured
mean base quality 32.2 measured
adapter content pct 0.07 measured
duplication rate pct 52.31 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 64/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 80.1 measured ×1 51%
mean base quality 32.2 measured ×0.6 70%
adapter content pct 0.07 measured ×0.4 100%
duplication rate pct 52.31 measured ×0.4 50%
QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0