Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR1756314

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

68/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

RNA-Seq of Aedes aegypti on an Illumina HiSeq 2000 generates ~4.9 million reads at moderate base quality (88.3% ≥Q20), enabling transcriptome profiling of this disease vector. The moderate read depth and quality support abundance quantification. Reuse requires quality filtering.

Data type / assay
bulk-RNA-seq
Organism
Aedes aegypti
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 738007120 reported
total reads 4855310 reported
n content pct 0.015 measured
pct q20 bases 88.3 measured
pct q30 bases 82.4 measured
gc content pct 37.2 measured
mean read length 76 measured
mean base quality 33.1 measured
adapter content pct 0.04 measured
duplication rate pct 62.62 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 68/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 82.4 measured ×1 62%
mean base quality 33.1 measured ×0.6 85%
adapter content pct 0.04 measured ×0.4 100%
duplication rate pct 62.62 measured ×0.4 28%
QC cost 40 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0