Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR1756351

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

82/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

RNA-seq from Aedes albopictus on Illumina HiSeq 2000 with 6.2 million short reads and moderate quality (90.7% Q20, 86.2% Q30). Lower sequencing depth and quality require careful preprocessing but dataset is usable for focused gene expression studies targeting specific transcripts in disease vector physiology.

Data type / assay
bulk-RNA-seq
Organism
Aedes albopictus
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 942059216 reported
total reads 6197758 reported
n content pct 0.037 measured
pct q20 bases 90.7 measured
pct q30 bases 86.2 measured
gc content pct 44.1 measured
mean read length 76 measured
mean base quality 34.2 measured
adapter content pct 0.09 measured
duplication rate pct 56.19 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 82/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 86.2 measured ×1 81%
mean base quality 34.2 measured ×0.6 100%
adapter content pct 0.09 measured ×0.4 100%
duplication rate pct 56.19 measured ×0.4 42%
QC cost 1.2 min compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0