Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRR1756416

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

72/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

RNA-Seq of Anopheles gambiae on an Illumina HiSeq 2000 yields ~5.3 million reads at moderate base quality (87.6% ≥Q20), enabling transcriptome profiling of this malaria vector with lower-than-typical quality. The substantial read count enables abundance estimation. Reuse requires careful quality filtering.

Data type / assay
bulk-RNA-seq
Organism
Anopheles gambiae
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 800639176 reported
total reads 5267363 reported
n content pct 0.008 measured
pct q20 bases 87.6 measured
pct q30 bases 80.6 measured
gc content pct 46 measured
mean read length 76 measured
mean base quality 32.3 measured
adapter content pct 0.02 measured
duplication rate pct 34.46 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 72/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 80.6 measured ×1 53%
mean base quality 32.3 measured ×0.6 72%
adapter content pct 0.02 measured ×0.4 100%
duplication rate pct 34.46 measured ×0.4 90%
QC cost 50 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0