Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR1756490

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

77/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

RNA-Seq of Aedes aegypti on an Illumina HiSeq 2000 yields ~4.4 million reads at moderate base quality (90.1% ≥Q20), enabling transcriptome profiling of this disease vector. The moderate read count and quality support abundance-based expression analysis. Reuse for differential expression requires quality filtering.

Data type / assay
bulk-RNA-seq
Organism
Aedes aegypti
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 666913680 reported
total reads 4387590 reported
n content pct 0.002 measured
pct q20 bases 90.1 measured
pct q30 bases 85.2 measured
gc content pct 39.8 measured
mean read length 76 measured
mean base quality 34 measured
adapter content pct 0.11 measured
duplication rate pct 65.77 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 77/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85.2 measured ×1 76%
mean base quality 34 measured ×0.6 100%
adapter content pct 0.11 measured ×0.4 100%
duplication rate pct 65.77 measured ×0.4 21%
QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0