SRR1765037

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

95/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

RNA-Seq of Anopheles gambiae on an Illumina HiSeq 2000 generates ~1.8 million reads at high base quality (94.1% ≥Q20), enabling transcriptome profiling of this malaria vector for studies of immunity. The moderate read depth and quality support targeted analysis. Reuse for expression studies is suitable.

Data type / assay

bulk-RNA-seq

Organism

Anopheles gambiae

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 278050864 reported

total reads 1829282 reported

n content pct 0.018 measured

pct q20 bases 94.1 measured

pct q30 bases 90.3 measured

gc content pct 46.7 measured

mean read length 76 measured

mean base quality 35.5 measured

adapter content pct 0.03 measured

duplication rate pct 43.66 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 95/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.3 measured ×1 100%

mean base quality 35.5 measured ×0.6 100%

adapter content pct 0.03 measured ×0.4 100%

duplication rate pct 43.66 measured ×0.4 70%

QC cost 35 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0