SRR1765246

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

95/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

RNA-seq from Anopheles gambiae on Illumina HiSeq 2000 with 1.7 million short reads at solid quality (95.1% Q20, 91.9% Q30). Limited sequencing depth constrains transcript detection but data enables focused gene expression studies of specific pathways relevant to disease transmission.

Data type / assay

bulk-RNA-seq

Organism

Anopheles gambiae

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 252576272 reported

total reads 1661686 reported

n content pct 0.025 measured

pct q20 bases 95.1 measured

pct q30 bases 91.9 measured

gc content pct 46.1 measured

mean read length 76 measured

mean base quality 36 measured

adapter content pct 0.04 measured

duplication rate pct 42.82 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 95/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.9 measured ×1 100%

mean base quality 36 measured ×0.6 100%

adapter content pct 0.04 measured ×0.4 100%

duplication rate pct 42.82 measured ×0.4 72%

QC cost 33 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0