Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR1767680

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

91/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

RNA-Seq of Bombyx mori on an Illumina HiSeq 2000 generates ~45.3 million reads at high base quality (98.4% ≥Q20), enabling comprehensive transcriptome profiling of this silkworm model organism for studies of development, immunity, and silk protein synthesis. The substantial read depth and exceptional quality support robust quantification and isoform detection. Reuse for comparative transcriptomics is well-supported.

Data type / assay
bulk-RNA-seq
Organism
Bombyx mori
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 9052692600 reported
total reads 45263463 reported
n content pct 0.021 measured
pct q20 bases 98.4 measured
pct q30 bases 94.8 measured
gc content pct 47.2 measured
mean read length 100 measured
mean base quality 36.6 measured
adapter content pct 0.2 measured
duplication rate pct 55.06 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 91/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.8 measured ×1 100%
mean base quality 36.6 measured ×0.6 100%
adapter content pct 0.2 measured ×0.4 100%
duplication rate pct 55.06 measured ×0.4 44%
QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0