SRR1768517

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Gossypium hirsutum

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 5955072164 reported

total reads 19718782 reported

n content pct 0.003 measured

pct q20 bases 94.2 measured

pct q30 bases 87.1 measured

gc content pct 47.6 measured

mean read length 151 measured

mean base quality 34 measured

adapter content pct 13.32 measured

duplication rate pct 26.2 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87.1 measured ×1 86%

mean base quality 34 measured ×0.6 100%

adapter content pct 13.32 measured ×0.4 37%

duplication rate pct 26.2 measured ×0.4 100%

QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0