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SRR1777746
SRAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
70/100 · CStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Mizuhopecten yessoensis
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
10.14
measured
checksum ok
yes
reported
total bases
2771016804
reported
total reads
16097936
reported
n content pct
0.007
measured
pct q20 bases
95.7
measured
pct q30 bases
88.6
measured
pct reads q30
90.1
measured
sampled bases
56693253
measured
sampled reads
824804
measured
gc content pct
37.4
measured
polyg tail pct
0
measured
read length sd
33.2
measured
read length max
100
measured
read length min
1
measured
read length n50
99
measured
max base quality
41
measured
mean read length
68.7
measured
max n pct per pos
0.369
measured
mean base quality
35.1
measured
pct reads lt 100bp
91.51
measured
read length median
81
measured
adapter content pct
0
measured
median read quality
36.5
measured
duplication rate pct
62.56
measured
overrepresented top pct
0.21
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 70/100
The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
88.6
measured
×1
93%
duplication rate pct
62.56
measured
×0.5
0%
adapter content pct
0
measured
×0.4
100%
QC cost
16 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0