SRR1777747

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

74/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Mizuhopecten yessoensis

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 7.22 measured

checksum ok yes reported

total bases 1595199255 reported

total reads 13477314 reported

n content pct 0.004 measured

pct q20 bases 97.4 measured

pct q30 bases 92.2 measured

pct reads q30 92.6 measured

sampled bases 63149951 measured

sampled reads 641694 measured

gc content pct 38.1 measured

polyg tail pct 0.01 measured

read length sd 2.3 measured

read length max 100 measured

read length min 1 measured

read length n50 99 measured

max base quality 41 measured

mean read length 98.4 measured

max n pct per pos 0.26 measured

mean base quality 36.1 measured

pct reads lt 100bp 82.11 measured

read length median 99 measured

adapter content pct 0 measured

median read quality 37.5 measured

duplication rate pct 52.53 measured

overrepresented top pct 0.04 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 74/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.2 measured ×1 100%

duplication rate pct 52.53 measured ×0.5 0%

adapter content pct 0 measured ×0.4 100%

QC cost 54 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0