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SRR1777748
SRAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
83/100 · BStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Mizuhopecten yessoensis
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
9.45
measured
checksum ok
yes
reported
total bases
1814176979
reported
total reads
10961939
reported
n content pct
0.001
measured
pct q20 bases
95.4
measured
pct q30 bases
87
measured
pct reads q30
90.1
measured
sampled bases
54475837
measured
sampled reads
765851
measured
gc content pct
38
measured
polyg tail pct
0
measured
read length sd
32.1
measured
read length max
100
measured
read length min
1
measured
read length n50
99
measured
max base quality
41
measured
mean read length
71.1
measured
max n pct per pos
0.063
measured
mean base quality
34.7
measured
pct reads lt 100bp
90.84
measured
read length median
87
measured
adapter content pct
0
measured
median read quality
35.9
measured
duplication rate pct
18.7
measured
overrepresented top pct
0.04
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 83/100
The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
87
measured
×1
85%
duplication rate pct
18.7
measured
×0.5
67%
adapter content pct
0
measured
×0.4
100%
QC cost
22 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0