Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
← Dataset search

SRR1779088

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

56/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human WGS with critically insufficient coverage (1×, extrapolated) rendering it unsuitable for variant calling or genotyping. Evidence strength is low (0.61) and the coverage metric is extrapolated rather than measured, making this reading provisional. A deep measured pass is pending before reuse can be considered.

Data type / assay
WGS
Organism
Homo sapiens
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 3134413194 reported
total reads 15516897 reported
mean coverage 1 extrapolated
n content pct 0 measured
pct q20 bases 93.5 measured
pct q30 bases 86.8 measured
gc content pct 40.5 measured
mean read length 101 measured
mean base quality 34.5 measured
adapter content pct 0 measured
duplication rate pct 0.64 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 56/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 1 extrapolated ×1.2 0%
pct q30 bases 86.8 measured ×1 84%
duplication rate pct 0.64 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 18 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0