Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR1779089

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

56/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

WGS from Homo sapiens with grade-F and low evidence_strength (0.61); mean coverage 0.9× (extrapolated, not yet measured) is far below the 30–50× standard for clinical/research WGS and unsuitable for reliable variant calling. Base quality (Q30=87%) is acceptable but depth deficiency is disqualifying. Deep measured resequencing required; provisional reading pending.

Data type / assay
WGS
Organism
Homo sapiens
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2836478546 reported
total reads 14041973 reported
mean coverage 0.9 extrapolated
n content pct 0.001 measured
pct q20 bases 93.7 measured
pct q30 bases 87 measured
gc content pct 40.4 measured
mean read length 101 measured
mean base quality 34.6 measured
adapter content pct 0 measured
duplication rate pct 1.36 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 56/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 0.9 extrapolated ×1.2 0%
pct q30 bases 87 measured ×1 85%
duplication rate pct 1.36 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 9 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0