SRR1779347

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

66/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Whole-genome sequencing on Illumina HiSeq 2500 from Homo sapiens with 166.5 million reads at 10.8x mean coverage and good quality (94.8% Q20, 90.9% Q30). Robust coverage enables reliable small-variant discovery, copy-number profiling, and comprehensive genomic characterization for human genetic studies and disease research.

Data type / assay

WGS

Organism

Homo sapiens

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 33631916876 reported

total reads 166494638 reported

mean coverage 10.8 extrapolated

n content pct 0.027 measured

pct q20 bases 94.8 measured

pct q30 bases 90.9 measured

gc content pct 46.7 measured

mean read length 101 measured

mean base quality 35.6 measured

adapter content pct 0.14 measured

duplication rate pct 2.64 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 66/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 10.8 extrapolated ×1.2 13%

pct q30 bases 90.9 measured ×1 100%

duplication rate pct 2.64 measured ×0.5 100%

adapter content pct 0.14 measured ×0.4 100%

QC cost 42 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0