Corpus 1,283 assessed · 1,184 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRR1781607

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

16S/18S amplicon sequencing of plant metagenome on an Illumina MiSeq generates ~93,000 reads at high base quality (95.8% ≥Q20), enabling microbial community profiling of plant-associated microbiota. The modest read count is typical for amplicon surveys and sufficient for community composition assessment. Reuse for alpha diversity and taxonomic profiling requires normalization.

Data type / assay
amplicon
Organism
plant metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 27242462 reported
total reads 93398 reported
n content pct 0.002 measured
pct q20 bases 95.8 measured
pct q30 bases 95.2 measured
gc content pct 56.1 measured
mean read length 291.7 measured
mean base quality 36.7 measured
adapter content pct 0 measured
duplication rate pct 97.12 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.2 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 4 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0