SRR1781767

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Targeted amplicon sequencing on Illumina MiSeq from plant metagenome with 199,261 reads at high GC content (56.1%) and excellent quality (95.3% Q20, 94.7% Q30). Amplicon design enables rapid and cost-effective community profiling of plant-associated microbiota despite limitations for assembly-based approaches.

Data type / assay

amplicon

Organism

plant metagenome

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 58150620 reported

total reads 199261 reported

n content pct 0.003 measured

pct q20 bases 95.3 measured

pct q30 bases 94.7 measured

gc content pct 56.1 measured

mean read length 291.8 measured

mean base quality 36.5 measured

adapter content pct 0 measured

duplication rate pct 98.16 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.7 measured ×1 100%

adapter content pct 0 measured ×0.5 100%

QC cost 8 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0