SRR1795973

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Small RNA-seq on Illumina MiSeq from Cochliomyia hominivorax with 1.0 million reads at high quality (98.8% Q20, 94.8% Q30). MicroRNA-specific library enables discovery of small RNA-mediated gene regulation in parasitic fly biology and development.

Data type / assay

bulk-RNA-seq

Organism

Cochliomyia hominivorax

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 51421850 reported

total reads 1028437 reported

n content pct 0.002 measured

pct q20 bases 98.8 measured

pct q30 bases 94.8 measured

gc content pct 48.6 measured

mean read length 50 measured

mean base quality 35.3 measured

adapter content pct 0 measured

duplication rate pct 93.6 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.8 measured ×1 100%

mean base quality 35.3 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 93.6 measured ×0.4 0%

QC cost 39 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0