SRR1798750

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

HiSeq 1000 RNA-seq of the honey bee *Apis mellifera* generates 39.3M reads, 1.97 Gb bases, and 96.6% Q20, enabling comprehensive mapping of bee transcriptomes across tissues, developmental stages, or behavioral states with high fidelity. The large dataset supports isoform-level analysis. Search: honey bee transcriptome, *Apis mellifera* RNA-seq, social insect genomics.

Data type / assay

bulk-RNA-seq

Organism

Apis mellifera

Instrument

Illumina HiSeq 1000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1965091950 reported

total reads 39301839 reported

n content pct 0.009 measured

pct q20 bases 96.6 measured

pct q30 bases 94.2 measured

gc content pct 39.3 measured

mean read length 50 measured

mean base quality 37.2 measured

adapter content pct 0.1 measured

duplication rate pct 22.09 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.2 measured ×1 100%

mean base quality 37.2 measured ×0.6 100%

adapter content pct 0.1 measured ×0.4 100%

duplication rate pct 22.09 measured ×0.4 100%

QC cost 50 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0