SRR1801279

ENA first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

87/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Whole-genome sequencing of Aspergillus niger ATCC 13496 via HiSeq 2000, generating 44 million reads with high quality (85.2% Q30). This fungal WGS dataset enables variant discovery and genomic analysis in a model filamentous fungus used for industrial enzyme production and metabolic studies.

Data type / assay

WGS

Organism

Aspergillus niger ATCC 13496

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 13483992600 reported

total reads 44946642 reported

n content pct 0.014 measured

pct q20 bases 92.8 measured

pct q30 bases 85.2 measured

gc content pct 48.7 measured

mean read length 150 measured

mean base quality 33.4 measured

adapter content pct 0.13 measured

duplication rate pct 1.62 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 87/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85.2 measured ×1 76%

duplication rate pct 1.62 measured ×0.5 100%

adapter content pct 0.13 measured ×0.4 100%

QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0