Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

SRR1917329

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

35/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

miRNA-Seq (Illumina HiSeq 2000, Homo sapiens), grade F. Borderline base quality—pct_q30_bases=74.5 and mean_base_quality=30.1—creates moderate error rates that elevate misclassification risk in miRNA expression estimates. Evidence strength is low; marginal for reuse only with very high confidence thresholds.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1549612299 reported
total reads 62920619 reported
n content pct 0.028 measured
pct q20 bases 81.6 measured
pct q30 bases 74.5 measured
gc content pct 44.7 measured
mean read length 25.4 measured
mean base quality 30.1 measured
adapter content pct 0.17 measured
duplication rate pct 82.8 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 35/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 74.5 measured ×1 23%
mean base quality 30.1 measured ×0.6 35%
adapter content pct 0.17 measured ×0.4 100%
duplication rate pct 82.8 measured ×0.4 0%
QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 89