Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRR1920182

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

HiSeq 2000 RNA-seq of the swimming crab *Portunus trituberculatus* provides 30.6M reads, 6.1 Gb bases, and 94.4% Q20 for comprehensive transcriptome profiling across crustacean tissues, larval development, or immune challenges. The large dataset enables detection of low-abundance transcripts relevant to aquaculture genomics. Search: crustacean RNA-seq, *Portunus* transcriptome, aquaculture genomics.

Data type / assay
bulk-RNA-seq
Organism
Portunus trituberculatus
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 6111466400 reported
total reads 30557332 reported
n content pct 0.001 measured
pct q20 bases 94.4 measured
pct q30 bases 86.7 measured
gc content pct 45.1 measured
mean read length 100 measured
mean base quality 34.3 measured
adapter content pct 0.07 measured
duplication rate pct 43.63 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 86.7 measured ×1 84%
mean base quality 34.3 measured ×0.6 100%
adapter content pct 0.07 measured ×0.4 100%
duplication rate pct 43.63 measured ×0.4 70%
QC cost 13 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0