SRR1924287

ENA first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

79/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq short-read (yeast). Grade C—marginal for reuse. Measured duplication (62.8%, component score 27/100) and adapter content (10.69%, component score 52/100) are both high; short read length (49 bp, measured) compounds mapping ambiguity. Acceptable only for large-scale expression surveys; unsuitable for single-gene validation studies.

Data type / assay

bulk-RNA-seq

Organism

Saccharomyces cerevisiae

Instrument

Illumina Genome Analyzer

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 9954526204 reported

total reads 101576798 reported

n content pct 0.041 measured

pct q20 bases 93.9 measured

pct q30 bases 89.8 measured

gc content pct 48.4 measured

mean read length 49 measured

mean base quality 35.6 measured

adapter content pct 10.69 measured

duplication rate pct 62.8 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 79/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.8 measured ×1 99%

mean base quality 35.6 measured ×0.6 100%

adapter content pct 10.69 measured ×0.4 52%

duplication rate pct 62.8 measured ×0.4 27%

QC cost 30 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0