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SRR1924445
SRAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
44/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Homo sapiens
Instrument
PacBio RS
Platform
PACBIO_SMRT
Read type
long-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
6.42
measured
checksum ok
yes
reported
total bases
2668099323
reported
total reads
735669
reported
mean coverage
0.9
extrapolated
n content pct
0
measured
pct q20 bases
78.4
measured
pct q30 bases
63
measured
pct reads q30
67.5
measured
sampled bases
20988287
measured
sampled reads
11464
measured
gc content pct
39.9
measured
polyg tail pct
0
measured
read length sd
418
measured
quality dropoff
-0.3
measured
read length max
2787
measured
read length min
680
measured
read length n50
1949
measured
max base quality
73
measured
mean read length
1830.8
measured
max n pct per pos
0
measured
mean base quality
38.6
measured
pct reads lt 100bp
0
measured
read length median
1834
measured
adapter content pct
0
measured
median read quality
37.2
measured
duplication rate pct
0
measured
overrepresented top pct
0.01
measured
How this grade was computed
Weighted mean of 5 scored metric(s) → 44/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
mean coverage
0.9
extrapolated
×1.2
0%
read length n50
1949
measured
×1
0%
mean base quality
38.6
measured
×0.8
100%
duplication rate pct
0
measured
×0.5
100%
adapter content pct
0
measured
×0.4
100%
QC cost
9 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0