SRR1945362

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

31/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Homo sapiens

Instrument

PacBio RS

Platform

PACBIO_SMRT

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 10.01 measured

checksum ok yes reported

total bases 709145002 reported

total reads 163482 reported

mean coverage 0.2 extrapolated

n content pct 0 measured

sampled bases 64625523 measured

sampled reads 21104 measured

gc content pct 43.5 measured

polyg tail pct 0.04 measured

read length sd 4250.3 measured

quality dropoff 0 measured

read length max 35794 measured

read length min 11 measured

read length n50 7960 measured

max base quality 14 measured

mean read length 3062.2 measured

max n pct per pos 0 measured

mean base quality 6.3 measured

pct reads lt 100bp 0.22 measured

read length median 1185 measured

adapter content pct 0 measured

median read quality 1.8 measured

duplication rate pct 0.06 measured

overrepresented top pct 0.04 measured

How this grade was computed

Weighted mean of 5 scored metric(s) → 31/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 0.2 extrapolated ×1.2 0%

read length n50 7960 measured ×1 29%

mean base quality 6.3 measured ×0.8 0%

duplication rate pct 0.06 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 20 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0