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SRR1945366
SRAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
44/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Homo sapiens
Instrument
PacBio RS
Platform
PACBIO_SMRT
Read type
long-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
7.03
measured
checksum ok
yes
reported
total bases
540169688
reported
total reads
163482
reported
mean coverage
0.2
extrapolated
n content pct
0
measured
pct q20 bases
82.7
measured
pct q30 bases
63.3
measured
pct reads q30
68.7
measured
sampled bases
697382
measured
sampled reads
351
measured
gc content pct
41
measured
polyg tail pct
0
measured
read length sd
857.9
measured
quality dropoff
2.5
measured
read length max
5621
measured
read length min
524
measured
read length n50
2092
measured
max base quality
80
measured
mean read length
1986.8
measured
max n pct per pos
0
measured
mean base quality
39.7
measured
pct reads lt 100bp
0
measured
read length median
1783
measured
adapter content pct
0
measured
median read quality
39.9
measured
duplication rate pct
0
measured
overrepresented top pct
0.28
measured
How this grade was computed
Weighted mean of 5 scored metric(s) → 44/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
mean coverage
0.2
extrapolated
×1.2
0%
read length n50
2092
measured
×1
0%
mean base quality
39.7
measured
×0.8
100%
duplication rate pct
0
measured
×0.5
100%
adapter content pct
0
measured
×0.4
100%
QC cost
1 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0