SRR1945370

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

43/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: partly measured

Data type / assay

WGS

Organism

Homo sapiens

Instrument

PacBio RS

Platform

PACBIO_SMRT

Read type

hybrid (short+long)

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 9.83 measured

checksum ok yes reported

total bases 402556865 reported

total reads 163482 reported

mean coverage 0.1 extrapolated

n content pct 0 measured

sampled bases 66950673 measured

sampled reads 35190 measured

gc content pct 42.5 measured

polyg tail pct 0.03 measured

read length sd 3320.2 measured

quality dropoff 0 measured

read length max 56126 measured

read length min 11 measured

read length n50 5531 measured

max base quality 14 measured

mean read length 1902.5 measured

max n pct per pos 0 measured

mean base quality 5.9 measured

pct reads lt 100bp 0.39 measured

read length median 745 measured

adapter content pct 0 measured

median read quality 1.4 measured

duplication rate pct 0.06 measured

overrepresented top pct 0.03 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 43/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 0.1 extrapolated ×1.2 0%

duplication rate pct 0.06 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0