SRR1945445

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

72/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Arabidopsis thaliana

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3719147200 reported

total reads 18595736 reported

mean coverage 27.5 extrapolated

n content pct 0.005 measured

pct q20 bases 88.4 measured

pct q30 bases 79 measured

gc content pct 37.9 measured

mean read length 100 measured

mean base quality 32.1 measured

adapter content pct 0.25 measured

duplication rate pct 19.72 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 72/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 27.5 extrapolated ×1.2 89%

pct q30 bases 79 measured ×1 45%

duplication rate pct 19.72 measured ×0.5 63%

adapter content pct 0.25 measured ×0.4 100%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0