SRR1946833

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq of Suaeda fruticosa (salt marsh halophyte) on Illumina HiSeq 2000 generates 3.4 billion bases with 94.9% Q20 from 17 million short reads, enabling transcriptome characterization for salt tolerance mechanisms and comparative analysis with glycophytes.

Data type / assay

bulk-RNA-seq

Organism

Suaeda fruticosa

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3402304800 reported

total reads 17011524 reported

n content pct 0.007 measured

pct q20 bases 94.9 measured

pct q30 bases 89.3 measured

gc content pct 45.3 measured

mean read length 100 measured

mean base quality 35.1 measured

adapter content pct 2.48 measured

duplication rate pct 56.37 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.3 measured ×1 97%

mean base quality 35.1 measured ×0.6 100%

adapter content pct 2.48 measured ×0.4 97%

duplication rate pct 56.37 measured ×0.4 41%

QC cost 8 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0