SRR1947646

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

29/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Whole-genome sequencing of Homo sapiens via PacBio RS generates 7.3 billion long-read bases from 490k reads enabling de novo assembly and structural variant discovery, though modest 2.3× mean coverage limits calling confidence for all variants.

Data type / assay

WGS

Organism

Homo sapiens

Instrument

PacBio RS

Platform

PACBIO_SMRT

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 7283064979 reported

total reads 490446 reported

mean coverage 2.3 extrapolated

n content pct 0 measured

pct q20 bases 0 measured

pct q30 bases 0 measured

gc content pct 39.4 measured

mean read length 10948.7 measured

mean base quality 8.3 measured

adapter content pct 0.02 measured

duplication rate pct 0 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 29/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 2.3 extrapolated ×1.2 0%

pct q30 bases 0 measured ×1 0%

duplication rate pct 0 measured ×0.5 100%

adapter content pct 0.02 measured ×0.4 100%

QC cost 37 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0