SRR1950267

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

35/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Homo sapiens

Instrument

PacBio RS

Platform

PACBIO_SMRT

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 5.47 measured

checksum ok yes reported

total bases 1914672969 reported

total reads 163482 reported

mean coverage 0.6 extrapolated

n content pct 0 measured

sampled bases 174865042 measured

sampled reads 20055 measured

gc content pct 40.8 measured

polyg tail pct 0 measured

read length sd 4982.6 measured

quality dropoff 0 measured

read length max 30503 measured

read length min 11 measured

read length n50 11140 measured

max base quality 3 measured

mean read length 8719.3 measured

max n pct per pos 0 measured

mean base quality 3 measured

pct reads lt 100bp 0.04 measured

read length median 8530 measured

adapter content pct 0.01 measured

median read quality 3 measured

duplication rate pct 0 measured

overrepresented top pct 0 measured

How this grade was computed

Weighted mean of 5 scored metric(s) → 35/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 0.6 extrapolated ×1.2 0%

read length n50 11140 measured ×1 48%

mean base quality 3 measured ×0.8 0%

duplication rate pct 0 measured ×0.5 100%

adapter content pct 0.01 measured ×0.4 100%

QC cost 20 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0