Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR1950290

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

29/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

PacBio RS long-read WGS of human generates 490k reads spanning 5.2 Gb (1.7× haploid coverage) with characteristic PacBio error profiles; ideal for resolving structural variants and repetitive regions but sparse coverage limits complete de novo assembly or small-variant discovery. Q-score reporting is absent, reflecting older PacBio metadata standards. Search: human long-read sequencing, PacBio WGS, structural variants.

Data type / assay
WGS
Organism
Homo sapiens
Instrument
PacBio RS
Platform
PACBIO_SMRT
Read type
long-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 5195298270 reported
total reads 490446 reported
mean coverage 1.7 extrapolated
n content pct 0 measured
pct q20 bases 0 measured
pct q30 bases 0 measured
gc content pct 41.8 measured
mean read length 5558 measured
mean base quality 8.1 measured
adapter content pct 0.01 measured
duplication rate pct 0.01 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 29/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 1.7 extrapolated ×1.2 0%
pct q30 bases 0 measured ×1 0%
duplication rate pct 0.01 measured ×0.5 100%
adapter content pct 0.01 measured ×0.4 100%
QC cost 7 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0