SRR1951523

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

92/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq of Calliphora vicina on Illumina HiSeq 2000 captures 741 million bases from 7.88 million short reads at 98% Q20, providing high-quality transcriptome data for this dipteran species.

Data type / assay

bulk-RNA-seq

Organism

Calliphora vicina

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 740933098 reported

total reads 7882267 reported

n content pct 0.006 measured

pct q20 bases 98 measured

pct q30 bases 96 measured

gc content pct 24.9 measured

mean read length 94 measured

mean base quality 37.3 measured

adapter content pct 0.09 measured

duplication rate pct 51.7 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 92/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96 measured ×1 100%

mean base quality 37.3 measured ×0.6 100%

adapter content pct 0.09 measured ×0.4 100%

duplication rate pct 51.7 measured ×0.4 52%

QC cost 48 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0