Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR1960214

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Whole-genome WGS of Salmonella enterica via HiSeq 2500, producing 1.6 million reads at high quality (89.5% Q30). This bacterial WGS dataset supports strain identification and genomic variant detection in this medically important gastrointestinal pathogen, though modest read count may limit rare-variant sensitivity.

Data type / assay
WGS
Organism
Salmonella enterica subsp. enterica
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 312039536 reported
total reads 1587114 reported
n content pct 0 measured
pct q20 bases 97.9 measured
pct q30 bases 89.5 measured
gc content pct 51.6 measured
mean read length 98.6 measured
mean base quality 35.1 measured
adapter content pct 4.08 measured
duplication rate pct 17.53 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.5 measured ×1 98%
duplication rate pct 17.53 measured ×0.5 70%
adapter content pct 4.08 measured ×0.4 78%
QC cost 46 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0