SRR1963259

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

73/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

HiSeq 2500 WGS of *Salmonella enterica* subsp. enterica yields 1.7M reads with 97.7% Q20, supporting SNP calling and phylogenetic placement for this general Salmonella population without serovar-specific bias. Search: *Salmonella enterica* WGS, bacterial population genomics.

Data type / assay

WGS

Organism

Salmonella enterica subsp. enterica

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 331160805 reported

total reads 1686349 reported

n content pct 0 measured

pct q20 bases 97.7 measured

pct q30 bases 88.9 measured

gc content pct 51.1 measured

mean read length 98.4 measured

mean base quality 34.9 measured

adapter content pct 6.82 measured

duplication rate pct 27 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 73/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88.9 measured ×1 95%

duplication rate pct 27 measured ×0.5 41%

adapter content pct 6.82 measured ×0.4 58%

QC cost 9 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0