SRR1965350

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

77/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Whole-genome sequencing of Salmonella enterica serovar Bareilly via Illumina HiSeq 2500 generates 220 million bases at 99.9% Q20 from 1.13 million short reads, enabling definitive SNP and indel detection for clinical epidemiology.

Data type / assay

WGS

Organism

Salmonella enterica subsp. enterica serovar Bareilly

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 219774515 reported

total reads 1131717 reported

n content pct 0 measured

pct q20 bases 99.9 measured

pct q30 bases 98.9 measured

gc content pct 50.5 measured

mean read length 97.7 measured

mean base quality 37.3 measured

adapter content pct 10.62 measured

duplication rate pct 18.86 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 77/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.9 measured ×1 100%

duplication rate pct 18.86 measured ×0.5 66%

adapter content pct 10.62 measured ×0.4 31%

QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0