SRR1966227

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

77/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Whole-genome sequencing of Salmonella enterica serovar Panama via Illumina HiSeq 2500 generates 327 million bases at 98.6% Q20 from 1.67 million short reads, supporting bacterial strain differentiation and epidemiological tracking.

Data type / assay

WGS

Organism

Salmonella enterica subsp. enterica serovar Panama

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 327100155 reported

total reads 1669542 reported

n content pct 0 measured

pct q20 bases 98.6 measured

pct q30 bases 92.7 measured

gc content pct 51.2 measured

mean read length 99.1 measured

mean base quality 35.8 measured

adapter content pct 10.65 measured

duplication rate pct 17.82 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 77/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.7 measured ×1 100%

duplication rate pct 17.82 measured ×0.5 69%

adapter content pct 10.65 measured ×0.4 31%

QC cost 14 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0