SRR1966376

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

80/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Whole-genome sequencing of Salmonella enterica serovar Haifa via Illumina HiSeq 2500 generates 227 million bases at 100% Q20 and 99% Q30 from 1.17 million short reads, enabling perfect SNP detection accuracy.

Data type / assay

WGS

Organism

Salmonella enterica subsp. enterica serovar Haifa

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 227408549 reported

total reads 1170619 reported

n content pct 0.001 measured

pct q20 bases 100 measured

pct q30 bases 99 measured

gc content pct 51.8 measured

mean read length 98 measured

mean base quality 37.4 measured

adapter content pct 6.92 measured

duplication rate pct 21.79 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 80/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 99 measured ×1 100%

duplication rate pct 21.79 measured ×0.5 57%

adapter content pct 6.92 measured ×0.4 58%

QC cost 18 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0