Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR1966914

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

74/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Short-read whole-genome sequencing of Salmonella enterica serovar Braenderup generated on an Illumina HiSeq 2500, yielding ~253 million bases across 1.3 million reads with exceptional quality (99.9% Q20 bases, 51.1% GC). This dataset is suitable for bacterial genomics applications including SNP calling, structural variant detection, and comparative genomic analysis, though the moderate depth may require careful consideration of coverage requirements for your specific application.

Data type / assay
WGS
Organism
Salmonella enterica subsp. enterica serovar Braenderup
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 253231593 reported
total reads 1315857 reported
n content pct 0 measured
pct q20 bases 99.9 measured
pct q30 bases 98.8 measured
gc content pct 51.1 measured
mean read length 97.6 measured
mean base quality 37.3 measured
adapter content pct 12.42 measured
duplication rate pct 19.08 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 74/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.8 measured ×1 100%
duplication rate pct 19.08 measured ×0.5 65%
adapter content pct 12.42 measured ×0.4 18%
QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0