Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR1973490

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bulk RNA-seq of Drosophila sechellia on Illumina HiSeq 2000 captures 5.8 billion bases from 28.6 million short reads at 96.4% Q20, providing high-depth transcriptome profiling suitable for subtle expression changes, rare transcript discovery, and population-level variation studies.

Data type / assay
bulk-RNA-seq
Organism
Drosophila sechellia
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 5783505632 reported
total reads 28631216 reported
n content pct 0.002 measured
pct q20 bases 96.4 measured
pct q30 bases 91.3 measured
gc content pct 48.6 measured
mean read length 101 measured
mean base quality 35.5 measured
adapter content pct 0.97 measured
duplication rate pct 22.47 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.3 measured ×1 100%
mean base quality 35.5 measured ×0.6 100%
adapter content pct 0.97 measured ×0.4 100%
duplication rate pct 22.47 measured ×0.4 100%
QC cost 9 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0