SRR1979068

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

40/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Ion Torrent PGM RNA-seq of *Bactrocera dorsalis* yields 1.8M reads with consistent 76.2% Q30, pairing with SRR1979069 to provide replicate transcript quantification for this tropical fruit pest. Platform-specific error profiles (primarily homopolymer runs) are manageable via tolerant alignment thresholds. Search: *Bactrocera* fruit fly, Ion Torrent RNA-seq.

Data type / assay

bulk-RNA-seq

Organism

Bactrocera dorsalis

Instrument

Ion Torrent PGM

Platform

ION_TORRENT

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 50269799 reported

total reads 1783633 reported

n content pct 0 measured

pct q20 bases 94.2 measured

pct q30 bases 76.2 measured

gc content pct 45.5 measured

mean read length 28.2 measured

mean base quality 30.6 measured

adapter content pct 0 measured

duplication rate pct 75.75 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 40/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 76.2 measured ×1 31%

mean base quality 30.6 measured ×0.6 43%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 75.75 measured ×0.4 0%

QC cost 38 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0