SRR1997868

ENA first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

81/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

HiSeq 2500 WGS of the multidrug-resistant nosocomial pathogen *Acinetobacter baumannii* AB0057 achieves 94.9% Q20 across 2.4M reads, enabling SNP- and indel-level detection for tracking antimicrobial resistance mutations and plasmid-borne virulence factors in this clinical strain. Search: *Acinetobacter baumannii* WGS, antibiotic resistance, bacterial genomics.

Data type / assay

WGS

Organism

Acinetobacter baumannii AB0057

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 608685750 reported

total reads 2434743 reported

n content pct 0.006 measured

pct q20 bases 94.9 measured

pct q30 bases 90.2 measured

gc content pct 40.9 measured

mean read length 126 measured

mean base quality 34.8 measured

adapter content pct 5.45 measured

duplication rate pct 22.98 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 81/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.2 measured ×1 100%

duplication rate pct 22.98 measured ×0.5 53%

adapter content pct 5.45 measured ×0.4 68%

QC cost 55 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0