SRR1997915

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

77/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Genome Analyzer II WGS of wild rice *Oryza glumipatula* yields 8M reads with 91% Q20 on an older platform, providing sequence coverage for studying genetic variation and phylogenetic relationships in this crop wild relative. The 41.4% GC reflects plant genomic composition. Search: wild rice, *Oryza glumipatula* WGS, crop genomics.

Data type / assay

WGS

Organism

Oryza glumipatula

Instrument

Illumina Genome Analyzer II

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1536000000 reported

total reads 8000000 reported

n content pct 0.001 measured

pct q20 bases 91 measured

pct q30 bases 81.4 measured

gc content pct 41.4 measured

mean read length 96 measured

mean base quality 32.9 measured

adapter content pct 0 measured

duplication rate pct 2.97 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 77/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 81.4 measured ×1 57%

duplication rate pct 2.97 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0