SRR2005657

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

74/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Whole-genome sequencing of human skin metagenome via Illumina HiSeq 2000 generates 755 million bases at 99.5% Q20 from 3.87 million short reads, enabling high-quality microbiota taxonomic and functional analysis.

Data type / assay

WGS

Organism

human skin metagenome

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 755474936 reported

total reads 3867405 reported

n content pct 0.025 measured

pct q20 bases 99.5 measured

pct q30 bases 97.3 measured

gc content pct 34.3 measured

mean read length 99.9 measured

mean base quality 37.7 measured

adapter content pct 0.19 measured

duplication rate pct 43.52 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 74/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.3 measured ×1 100%

duplication rate pct 43.52 measured ×0.5 0%

adapter content pct 0.19 measured ×0.4 100%

QC cost 3 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0