SRR2005710

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

89/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

WGS short-read (human skin metagenome). Grade B—good for taxonomic profiling and assembly. Duplication at 20.92% (measured, component score 60/100) is the limiting factor; Q30 (96.9%) and adapter content (0.04%) are strong. Expect inflated abundance estimates of highly amplified taxa; apply post-hoc normalization.

Data type / assay

WGS

Organism

human skin metagenome

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 457747594 reported

total reads 2351334 reported

n content pct 0.032 measured

pct q20 bases 99.4 measured

pct q30 bases 96.9 measured

gc content pct 34 measured

mean read length 99.9 measured

mean base quality 37.6 measured

adapter content pct 0.04 measured

duplication rate pct 20.92 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 89/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.9 measured ×1 100%

duplication rate pct 20.92 measured ×0.5 60%

adapter content pct 0.04 measured ×0.4 100%

QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0